Package index

Workflow

End-to-end functions for the typical ctdR analysis.

import_CTD()

Import CTD Chemical-Gene Interaction Data

enrichment_CTD()

Chemical Enrichment Analysis Using CTD

plot_CTD()

Plot Chemical Enrichment Results

Data access and interoperability

Read a CTD file the Bioconductor way, retrieve cached tables, record which CTD release an analysis ran on, and export the CTD gene sets for use with other enrichment engines.

CTDFile() import(<CTDFile>,<ANY>,<ANY>)

CTD Chemical-Gene Interactions File

ctd_cache()

Retrieve Cached CTD Data

ctd_provenance() print(<ctd_provenance>)

Provenance of the CTD data an analysis ran on

as_genesets_CTD()

Export CTD Gene Sets for Existing Enrichment Engines

Package

ctdR ctdR-package

ctdR: Enrichment Analysis of Chemical-Gene Interactions from CTD